The gene number can basically vary.
you can have <2 genes
Hi there,
Your code worked like a charm although it has a bug or a error on my side providing incomplete details.
My sample input was

Gene1,Gene2,spc1,spc2
Gene3,Gene1,spc1,spc2,spc4
Gene4,Gene1,spc1,spc2,spc5,spc3,spc1
etc

And I got the correct results.


But the sample can contains entries like the bellow

GeneX,GeneY,GeneP,spc1,spc2
GeneY,spc3,spc4

The desired result would be
GeneX,GeneY,GeneP,spc1,spc2,spc3,spc4


But the results which the script gives is
GeneX,GeneY,spc3,GeneP,spc1,spc2,spc4

*************************************************************

Also how can i modify the cureent code to give me aoutput like this Sample input

GeneX,GeneY,GeneP,spc1,spc2
GeneY,spc3,spc4
GeneZ,spc3,spc4

Desired Result
GeneX,GeneY,GeneP,GeneZ,spc1=1,spc2=1,spc3=2,spc4=2

I want to count the number of \/ "spc" for a given "spc" /\ so that i can later confirm the output. because I have a 25 mb txt file to process which will probably take hour or more.

In reply to Re^2: Clustering with Perl by nerve
in thread Clustering with Perl by nerve

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