As anon monk already said, turn on warnings. He is wrong on the cause of your problem though, $tsize[$tnum] is (as you expected) the size of the array in the hash of arrays
But in the following line you write
$thread[$i] which would try to access an element of the array @thread which simply doesn't exist. What you wanted to do was:
for ($i=0; $i<$tsize[$tnum] ; $i++)
{ $tlist[$tnum][$i] = $threads{$thread}[$i];
Note that you can eliminate this loop. The following is equivalent to the two lines above
push( @{$tlist[$tnum]}, @{$threads{$thread}} );
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