Also, if ^^ is not present I need to add it in with a new line character before the sequence.
Something like...
    
while (<$in>) 
    {
        if $in =~ /^^/  {
           s/\^\^/\n^^/g;
        print $out $_;
        else {
           s/[a]|[c]|[t]|[g]{6}/^^\n

    }

[download]

How would I correctly write the else?
I was thinking just find a series of a, c, t, or g's and add the ^^ before it but I don't know how to get the same series of bases in the substitution. Sorry I'm really bad at this lol

In reply to Re^3: Writing to file... by perl_n00b
in thread Writing to file... by perl_n00b

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