Hi monks,
Update: I have decided to use HTML::Parser to get this work done!!! Please look here
Using XML::Twig| HTML::Parser to help me with my other queries.
I have to write a program to extract characters from a text file. The text file looks like this
dd class="xref">GeneID:947412</dd>
<dd class="xref">GenomeReviews:AP009048_GR</dd>
<dd class="xref">GenomeReviews:U00096_GR</dd>
<dd class="xref"><a href="http://amigo.geneontolog
+y.org/cgi-bin/amigo/term-details.cgi?term=GO:0005524">GO:0005524</a><
+/dd>
<dd class="xref"><a href="http://amigo.geneontolog
+y.org/cgi-bin/amigo/term-details.cgi?term=GO:0005886">GO:0005886</a><
+/dd>
<dd class="xref"><a href="http://amigo.geneontolog
+y.org/cgi-bin/amigo/term-details.cgi?term=GO:0006810">GO:0006810</a><
+/dd>
<dd class="xref"><a href="http://amigo.geneontolog
+y.org/cgi-bin/amigo/term-details.cgi?term=GO:0016301">GO:0016301</a><
+/dd>
<dd class="xref">HOGENOM:P27254</dd>
I want to write a regular expression to extract "GO:(followed by those numbers)" only from this text and also it has to be extracted only once. This extracted string has to be stored in an array so I can pass it to another search query. I tried with this code
$line1 =~ m/"^\s+(.+)(GO:)(\d+).+"/g;
and it is not working. Can anyone help me out??
Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
Read Where should I post X? if you're not absolutely sure you're posting in the right place.
Please read these before you post! —
Posts may use any of the Perl Monks Approved HTML tags:
- a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
| |
For: |
|
Use: |
| & | | & |
| < | | < |
| > | | > |
| [ | | [ |
| ] | | ] |
Link using PerlMonks shortcuts! What shortcuts can I use for linking?
See Writeup Formatting Tips and other pages linked from there for more info.