Why do you think chdir is not working?
Make sure you understand the previous responses. They all provide good advice and relevant information. To re-iterate: you should use the chdir function rather than executing the chdir command in a sub-process.
But I wouldn't use chdir myself. I would do something more like the following:
use strict;
use warnings;
open( my $fh, "/home/raghvens/52xxmodulelist.txt" ) or die $!;
foreach my $m (<$fh>) {
chomp($m);
print "\nProcessing \"$m\" .. \n";
my $path = `/vobs/package134/inttools/modules/unixtools/srce/which
+Path $m`;
chomp($path);
$path .= '/confm/post_REFERENCED_to_EXPERIMENTAL';
print "\tChecking for link \"$path\"\n";
print "YES, Link is present" if(-l $path);
}
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