You guys having been a lifesaver so far! I have one more easy question though...
Why does this pattern match not search past the new line after "(95 aa)"? 
while (my $seq = <$IN2>) {
   if ($seq =~ />(\w+).+aa\)\n(\w+)/m) {
   $name = $1;
   $aa = $';

[download]
>CIMG_12545 | Coccidioides immitis RS hypothetical protein (translatio
+n) (95 aa)
MSSQPTTLQSQTGIQRHGEISSQAQKPTTALEEDDEFEDFPVEDWPQEDAEALGPAGTNN
DHLWEESWDDDDSNEEFSRQLKEELKKVEAMKQQ*

[download]

Thanks in advance!

In reply to Pattern Match Issue by perl_n00b

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