Sample protein names: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate D-erythrose-4-phosphat +e lyase (pyruvate-phosphorylating) gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (Gamma-Glu-gamma +-aminobutyraldehyde dehydrogenase) 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3 +-phosphate synthase)(EPSP synthase Hypothetical protein CBG17340 gonadotrophin alpha 2 subunit Doc4 protein , stress-induced optomotor-blind Dfrizzled-3 Tramtrack69 gutfeeling betaFTZ-F1 Sex-lethal Strabismus PAR3alpha Armadillo AP-2alpha GLUT1CBP eIF3-p44 Flamingo PP2Czeta PLCgamma TFIIIC90 Wingless Frizzled Profilin TXBP151
Sample sentences to tag on their protein names: The present p65(91) (arf)71 results show that the rate of Ca(2+)-induc +ed structural transition and Ca(2+) sensitivity of the inhibitory reg +ion of cTnI were modified by ( 1 ) thin filament formation , ( 2 ) th +e presence of strongly bound S1 , and ( 3 ) PKA phosphorylation of th +e N-terminus of cTnI
The searching for the above sentence takes about 9 sec (not 2 sec as I mentioned earlier as I was using smaller number of protein names) when using 7 million protein names.

In reply to Re: Tag protein names in sentences by sinlam
in thread Tag protein names in sentences by sinlam

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.