Maybe there's a clue to the solution to the OPs problem in there somewhere, but if there is, it went right over my head. Why exactly? I see I posted erroneously extra output, but if you run the batch file, you should be able to follow and learn how patch processes files.
Its a basic path management problem.
mnooning specifies -p0 -dNet-Daemon which means cd to Net-Deamon and strip zero leading path parts,
so patch looks for Net-Daemon/ChangeLog in Net-Deamon (Net-Deamon/Net-Deamon/ChangeLog)
which doesn't exist.
So mnooning needs to change to -p1, or remove both -p/-d options... or manually enter the correct file path when prompted.
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