You did use
PREFIX=~ LIB=~/lib/perl5, right? It's normal to be in a "random" directory. It's actually the "arch" directory. A module (e.g. Foo::Bar) may install itself into
$LIB/Foo/Bar.*
and/or
$LIB/$ARCH/Foo/Bar.*
where $LIB is the value passed to LIB=, and $ARCH is some system-specific string.
In DBD::mysql's case, most if not all the files will be installed in the arch dir.
As long as PERL5LIB include $LIB, Perl will look into both directories.
$ echo $PERL5LIB
/home/ikegami/lib/perl5
$ perl -V
...
@INC:
/home/ikegami/lib/perl5/x86_64-linux-gnu-thread-multi
/home/ikegami/lib/perl5
...
Don't move files around, you're introducing problems!
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