It is pretty clear that this program can be a kick-start though I wanted to extract the $seq->id and $seq->desc and then work on them a little bit to create a filename for files that each will contain one of these sequences
Do you believe that the sequence length can have a performance compromising effect on the the way the Bio::SeqIO does its job?
While not wanting to minimize the potential for the Out of Memory! error I still think of using a hash whose keys is $seq->id and whose values are the sequences data itself and then dumping each one of these into its corresponding folder.
In reply to Re^2: Bioinformatics: Slow Parsing of a Fasta File
by Anonymous Monk
in thread Bioinformatics: Slow Parsing of a Fasta File
by Anonymous Monk
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