Thank you snape. I am aware of Needleman Wunsch Algorithm and clustalw /Muscle or other alignment programs. All these look into sequence similarities etc in generating MSA, Which I am not interested. I need to specifically align only using insert/deletions (indels) in respective sequences.

In reply to Re^2: how to construct multiple sequence alignment from group of pairwise alignments by gudluck
in thread how to construct multiple sequence alignment from group of pairwise alignments by gudluck

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