The last time I checked ...

Last time you checked? You didn't check, you took the reported and extremely slow value ("half hour") at face value, instead of comparing your version with a bioperl-version.

In that same thread I showed the difference between bioperl or non-bioperl was much smaller than "half hour" vs "11 seconds".

Now to advocate avoiding a heavy framework for speed is fair enough. But you shouldn't repeat extreme slowness unchecked & unvalidated (it's a bit similar to this slanderous assertion about database - though, of course, that was worse! :) ).

In reply to Re^5: Bioinformatic task by erix
in thread Bioinformatic task by uvnew

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