Almighty Monks,

I am trying to translate a DNA sequence to a protein sequence using all 3 ORFs (same strand). However, when trying to pass options to the sequence object (like -frame => 1 or -complete => 1), the option is introduced into the object:

Source: 
use strict;
use warnings;
use Data::Dumper;
use Bio::Tools::CodonTable;
use Bio::Seq;

my $dna = 'ATGAAAGGAACATCCATTTTATTCAAAGCACCTCCAAACCTGCAATCCTAAGTTCCAGG
+CAACTCAATCCCAAAAATCCACTGTAGATGCCCAAAGGCTGGGGTGTTCGGTCTTCAACATTTTTGCCT
+TTGTGGCTCCCAGTCAAGATAGAGCTGCACCAAGTCCAATTCCATTCCTCATCACAGATGATTTTTTCT
+ACTTTAAGATCAGAACTATACAAGCTTCTTGCTTTGTGTCAGCATGCTGTTGTACCCATGGGCAAATTC
+TTAGGTAAGACAAAAACACAGTCCCAAGGGCAGGTAGTAATTTTTTCAGAAAAAGGTAAGGCAATCATT
+TATCTCAGTCTGCCCAGGACAGTCCCAATTTACACATGTATATTCTCCCAATCTGTAGGCTGTCTTTTC
+ATTTTGTTGATTATTTCACTTAATTTTTTATTATTTATTTATTTTATAGAGACAGATCTCATTATGTTG
+CCCAGGGTGATCCTTGATCTCCTGGCCTCAAGTGATCCTCCAACCTTGGTCTCCCAAAGTGCTGGGATT
+ACAGATGTGAACTACCACACCCAGTCAACGTGCAGAAGGTTTTCAGTTTGATGTAGTCTGATGTAGTCT
+CATGTATTTATCCTTCTTGTTGTTGCCTGAGCTTTTGGTGTGATATCCAAAAATATCATTGCCAAGATC
+AATATCAAGAAACTTTCCCCCTATGTTTCTTACAGAAATTTTATGGTTTCAGATTTTTCATCCATTTTG
+AGTATATTTGTGTGTATGATGTAAGATAAGGGTCCAGTCTCCCCAGTGTTGGATATCCAATTTTCATAA
+CACCATTTATTGAAGAGATTATTCTTTCTCCACTGTGTTTTCTTGATGTCCTTGTCAAAAATTAGTTGA
+CTTTTATATGCTTGGGTTTATTTCTGGGCTCTATTCTGTTTCATTGCTTTACATCTCTGTTTTCATGCC
+AGTGCCACAGTGTTTTGATTACTATAGCTTTGTAATATAATTTGAAATCAGAATGTGTAATACCTATAA
+CTTTGTTTTTTGCTCTAAAGATTTATTTATTTATTTATTTTTGCCATTTCAGGTCTTTTGTGGTTTCAT
+ATGAATTTCAGAATTGTTTTTCCTATTTCTGTGAAAAATGCCATTGACATTTTGATAGGGATTGTGTTG
+AATCTATATATTGCTTTGGATAGTATGGATG';

my $seq_obj = Bio::Seq->new(
    -seq => $dna,
    -alphabet => 'dna' );

my $prot_obj = $seq_obj->translate(-complete => 1); 

print $prot_obj->seq, "\n";

[download]
Output: 
MKGTSILFKAPPNLQS-completeVPGNSIPKIHCRCPKAGVFGLQHFCLCGSQSR-completeSCTK
+SNSIPHHR-completeFFLL-completeDQNYTSFLLCVSMLLYPWANS-completeVRQKHSPKG
+R-complete-completeFFQKKVRQSFISVCPGQSQFTHVYSPNL-completeAVFSFC-comple
+teLFHLIFYYLFIL-completeRQISLCCPG-completeSLISWPQVILQPWSPKVLGLQM-compl
+eteTTTPSQRAEGFQFDVV-completeCSLMYLSFLLLPELLV-completeYPKISLPRSISRNFPP
+MFLTEILWFQIFHPF-completeVYLCV-completeCKIRVQSPQCWISNFHNTIY-completeRD
+YSFSTVFS-completeCPCQKLVDFYMLGFISGLYSVSLLYISVFMPVPQCFDYYSFVI-complete
+FEIRMCNTYNFVFCSKDLFIYLFLPFQVFCGFI-completeISELFFLFL-completeKMPLTF-co
+mplete-completeGLC-completeIYILLWIVWM

[download]
Versions: 
Perl version v5.10.0
BioPerl 1.2.3

[download]

How do I correctly pass an option?
Any help is greatly appreciated!

In reply to BioPerl translate sequence by RobertCraven

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