Is the "java" command actually in /users/sophix/Desktop/prottest3/prottest3/ ? Sounds like it's not. If you are running it from that directory so you can use relative path names, you should chdir to that directory first and then do not include it as part of the command path.

In reply to Re: Calling Java using system() by saberworks
in thread Calling Java using system() by sophix

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