Hi,

Thank you for your reply.

No the "java" command but the executable jar file resides in that folder.

I tried changing the directory as follows:

my $pwd = cwd();
    my $newDIR ="/users/sophix/Desktop/prottest3/prottest3/";
    chdir $newDIR or die "Hmm\n";
    my $currdir = cwd();

[download]

Now, when I have java or java.exe, it complains: "Unrecognized option: -jar prottest-3.0.jar Could not create the Java virtual machine."

In reply to Re^2: Calling Java using system() by sophix
in thread Calling Java using system() by sophix

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