Hello Monks. I need to present the human genome as a multi-dimensional array. The input file text looks like that:

>chromosome_1

AATTGGCC...

>chromosome_2

GGGTACGA...

.

.

>chromosome_17

AGACTTGA...

And so on. I would like each row to be one chromosome, and each column to be one nucleotide (character), so in this example $Human_genome[1][3] will be 'T' and $Human_genome[16][2] is 'A'. The size of each chromosome is different (total of about 3 billion characters). I have enough RAM for this task. Many thanks for any suggestion!

In reply to Human genome array by uvnew

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