im using a 4by4 matrix, but using a data dumper, i noticed that the numbers didnt add up as they did in the matrix, does anything weird stick out to you guys? 

0.95 0.02 0.07 0.07 #A
0.03 0.01 0.06 0.83 #C
0.01 0.02 0.80 0.09 #G
0.01 0.95 0.07 0.01 #T

[download]
sub readdt2 {
  my $ifn = shift;
  open(my $IFH, "<$ifn") or die "cannot open file $ifn\n";
  my $line;
  my @nt = ("A","C","G","T");
  my %ret;
  my @tmp;
  for my $j(@nt) {
    $ret{$j} = [];
    $line = <$IFH>;
    chomp($line);
    @tmp = split(/\s+/,$line);
    for (my $i=0;$i<=$#tmp;$i++) {
      $ret{$j}[$i]= $tmp[$i] +0.0001;
    }
  }
  close($IFH);
  return(\%ret);
}

[download]

In reply to unexpected output, by DanielM0412

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":


  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.