Hi JHermida, what do you think, the following command in line 154 of your script does ?
my @files = <"$inputDir"*>;Try to change it to
my @files = glob "$inputDir*";if it's your intention to find all files beneath your top directory.
And you can use Perl::Critic for quickly finding some strange behavior, it stated (for line 154, but there are some other suggestions):
Glob written as <...> at line 154, column 14. See page 167 of PBP. Severity: 5
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