As it turns out, it was something really simple.... My script wasn't working because I didn't have the input file saved as the correct format. I created my txt file in excel (office for Macs 2011) and saved it as a tab delimited text file. This input did not make my script work. When I re-saved it as a Windows Formatted Text file, the script works great and my txt file is converted to fasta format no problem.

Thank you so much for your input everyone. It is appreciated.

In reply to Re^2: Printing all lines of a file using a perl one liner by la
in thread Printing all lines of a file using a perl one liner by la

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