perlintro, perlrun, B::Deparse, ... parse tab ... bioperl ...

Editing just one column in a file 

$ cat junk
BRCA1:breast cancer 1, early onset
TNF: tumor necrosis factor
OMG:oligodendrocyte myelin glycoprotein

$ perl -F: -lane " print $F[0]; " junk
BRCA1
TNF
OMG

$ perl -MO=Deparse -F: -lane " print $F[0]; " junk
BEGIN { $/ = "\n"; $\ = "\n"; }
LINE: while (defined($_ = <ARGV>)) {
    chomp $_;
    our(@F) = split(/:/, $_, 0);
    print $F[0];
}
-e syntax OK

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In reply to Re: Parsing in perl? by Anonymous Monk
in thread Parsing in perl? by perllearner007

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