So you want (?): 
$data{HG00554}[162] = (0 0, 0 0, ... , 0 0 )

[download]
I'm hoping you've come to understand why you don't want to use the shift in: 
$data{$individual}[ [ shift @snp_bins ] ] = $snp;

[download]
Assuming so, you could do something like: 
for my $index ( 0 .. $#snp_bins ){
  push( @{$data{HG00554}[$snp_bins[$index]]}, $snps[$index] );
}

[download]
I hope this is helpful, I'm still not convinced I'm understanding what exactly you're needing.

In reply to Re^2: Population of HoAoA based on file contents by state-o-dis-array
in thread Population of HoAoA based on file contents by iangibson

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