If your data is line-oriented (or otherwise processed in chunks), I'd just open a pipe to an external process:
# read
open my $in, '-|', 'gzip', '-dc', $filename;
while (<$in>) {
print $_;
}
close $in;
# write
open my $out, '|-', 'gzip', '-c', $filename;
print $out "blah";
close $out;
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