The problem was in the order the libraries were passed to the linker with swipl at the end.
Usually, libswipl is compiled as a dynamic library and so this problem is hidden, but for some unknown reason it is a static library on Ubuntu for i386.
In reply to Re: cpan -i Language::Prolog::Yaswi gives undefined symbol: clock_gettime
by salva
in thread cpan -i Language::Prolog::Yaswi gives undefined symbol: clock_gettime
by Steve_BZ
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