i have made all the possible corrections. but still i fail to get the proper output. 
open (my $fhConditions, "<1.txt"); 
my $l=6;
open (my $read, "<2.txt");
my @e = <$read>;
my $d = join('', @e );
$d =~ s/\s+//g;
while (<$fhConditions>) {
    push (my @line, $_);
my $count++;
}
for (my $i = 0; $i <$count; $i++)
{
my @pos = $line[$i] =~ /chr[0-9]\s+(.+?)\s/g;
if($pos[0] =~/[0-9]/)
{
my $match = substr($d,$pos[0],$l);
print "$line[$i]" if $match =~m/AAGCTT/;
}
if($pos[1] =~/[0-9]/)
{
my $a = $pos[0]-$l;
my $match = substr($d,$a,$l);
print "$line[$i]" if $match =~m/AAGCTT/;
}
}

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i doubt first of all its not getting the values it self from the array. i am not getting errors as well as output

In reply to Re^2: How to get rid of the errors in my perl script by Anonymous Monk
in thread How to get rid of the errors in my perl script by Anonymous Monk

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