in reply to substr is behaving differently with small vs large strings
I am happy to say that the problem I had been having is now fixed. I am, however, embarrassed by what was causing the problem. I was careless when my boss asked me to find a region of the contig for her by hand and actually entered notes in the sequence file its self. Being that the file is 551 pages of pure text, I did not remember/notice the additions when I looked at the result of the editcontig() sub to look for problems.
Thanks again to all of you for your help and reminding me to verify anything that I edit before taking for granted that all went as planned.
I have been converted, evangelized even to a believer in the PerlMonk society and will most assuredly be bugging you nice people in the future!
one last thank you and I will end... THANK YOU!
-Augustine
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