I doubt many people have used both. Just use whatever your admin finds easier to setup. I do find it very nice to be able to view the repository through a web browser, so tell you want something like ViewCVS or Trac as well if he picks svnserve. (The apache option allows some minimal browsing with no extra modules needed.)
Comment on Re: (OT) Subversion for Perl Development: svnserve vs Apache DAV