You don't speciy what the Module file is, or how you are running it, but if you need to keep restarting apache, I'm supposing that you're running something under mod_perl, in which case you should just be able to use:

     /etc/init.d/apache-perl restart
   or
     /etc/init.d/apache-perl graceful
[download]

Alternatively, because it doesn't sound like you are making use of mod_perl, you may want to use ModPerl::Registry to run your CGI with the power of mod_perl.

See Getting your feet wet with mod_perl