'1000' did seem suspicious along with '668954.p10' value, but I did not care to investigate any further (near blind copy & pasto, baby). Sorry for the useless data point.

After starting the program correctly ...

Trying 13104 probes with perl 5.010000 at q.pl line 19.
1203567383 at q.pl line 21.
1203567386 at q.pl line 28.
11376

Trying 13105 probes with perl 5.010000 at q.pl line 19.
1203565007 at q.pl line 21.
1203565331 at q.pl line 28.
11377
[download]