Re: bioperl and clustalw help

which line of your code triggers the error, $factory->align? What do you get after you turn on debugging (I think its something like ->new( -verbose=>1 ) or $ENV{BIOPERLDEBUG}=1;)?

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Re^2: bioperl and clustalw help by julio_514 (Acolyte) on Oct 23, 2008 at 13:02 UTC
Ok, I solved it:) The problem was with clustalw2. Somehow, this version of clustal have a problem with the command line... I installed clustalw1.8 and everything is fine know. Thanks for the reply anyway!:)	[reply]
Re^3: bioperl and clustalw help by Anonymous Monk on Feb 09, 2015 at 12:49 UTC
hi. can i know where to get the installation of clusterw1.8	[reply]
Re^4: bioperl and clustalw help by Corion (Patriarch) on Feb 09, 2015 at 12:51 UTC
I recommend talking to your system administrator or departement lead for that. They will most likely know what version works best and how to install it.	[reply]