in reply to Re^2: BioPerl StandAloneBlast is returning unexpected undefined SearchIO object
in thread BioPerl StandAloneBlast is returning unexpected undefined SearchIO object

Than it indicates a bug in that module. (That could be a documentation bug if its just not matching what you did by hand)
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Re^4: BioPerl StandAloneBlast is returning unexpected undefined SearchIO object
by WonkoTheSane (Novice) on Jun 25, 2009 at 18:13 UTC
    This is also what I'm thinking. Only thing is that I think it is a widely used module and it would seem odd to me that no one has encountered this bug before :)