in reply to Re: BioPerl StandAloneBlast is returning unexpected undefined SearchIO object
in thread BioPerl StandAloneBlast is returning unexpected undefined SearchIO object

I may be misreading the code (little wonder)
Huh? is my code that terrible? Or is it because its hard to understand if one is not familiar with BioPerl? Because that I can understand :)

But your making a good point, even though it still don't explain the error. But I think that it will definitely improve my workaround. Thanks!
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Re^3: BioPerl StandAloneBlast is returning unexpected undefined SearchIO object
by BrowserUk (Patriarch) on Jun 25, 2009 at 18:33 UTC
    Huh? is my code that terrible?

    Not your code (actually I didn't look at it that closely:); I was referring to the code inside Bio::Tools::Run::StandAloneBlast which I find extremely opaque.

    Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
    "Science is about questioning the status quo. Questioning authority".
    In the absence of evidence, opinion is indistinguishable from prejudice.
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