BIOPERL (using online bioinformatics tool)

vikuuu has asked for the wisdom of the Perl Monks concerning the following question:

Hi, I have got nucleotide sequences(7000) and I wanted to use a web tool http://www.ebi.ac.uk/asd-srv/wb.cgi?method=2 where I need to paste the sequences one by one and get the desired results.But I have got around 7000 sequences .I want to submit all the sequences in the tool and want to get the desired ouput.How I can do it in BIOPERL where I want to connect to these site and submit the sequences and get the result saved in some file .Please HELP I AM A New learner of perl.

Comment on BIOPERL (using online bioinformatics tool)

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Re: BIOPERL (using online bioinformatics tool) by Anonymous Monk on Mar 28, 2010 at 05:09 UTC
I don't think you can the way you described (see asd-srv site:search.cpan.org wb.cgi site:search.cpan.org ebi.ac.uk site:search.cpan.org). You could use WWW::Mechanize as your browser, submit the form, and get back data, and then do your bioperl thing on it.	[reply]
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Re: BIOPERL (using online bioinformatics tool) by Khen1950fx (Canon) on Mar 28, 2010 at 07:39 UTC
I googled and found Nucleotide BLAST.	[reply]
Re: BIOPERL (using online bioinformatics tool) by lima1 (Curate) on Mar 28, 2010 at 15:11 UTC
Seems like http://www.ebi.ac.uk/asd-srv/wb.cgi?method=6 supports FASTA files with multiple sequences. If that's not what you want, contact the authors.	[reply]