Re: How do i write code for searching motifs in a FASTA file?

in reply to How do i write code for searching motifs in a FASTA file?

At first glance you are missing a semi-colon at the end of your open ... line.

Cheers,

JohnGG

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Re^2: How do i write code for searching motifs in a FASTA file? by Anonymous Monk on Nov 23, 2010 at 00:10 UTC
Hi JohnGG Thanks for the feedback. I got it to work with the changes you suggested. btw have you any idea how to return the title line of a fasta file for each line the motif is found? thanks	[reply]
Re^3: How do i write code for searching motifs in a FASTA file? by johngg (Canon) on Nov 23, 2010 at 09:53 UTC
Sadly, I have no idea as I'm not in the bio-informatics line. Hopefully, the links provided by Sinistral and umasuresh will provide some answers. Cheers, JohnGG	[reply]
Re^3: How do i write code for searching motifs in a FASTA file? by umasuresh (Hermit) on Nov 23, 2010 at 16:14 UTC
you can follow this node Re: Refomating a large fasta file... for processing FASTA files and keep track of the title if you find the motif of interest.	[reply]

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