Re: Efficient walk/iterate along a string

in reply to Efficient walk/iterate along a string

Use benchmark to compare different ways of processing.
Use Devel::NYTProf to determine what portions of your program are slow
Can you process on clumps of proteins instead of one-by-one?
Are there alternate algorithmns for the various tasks you need to achieve?

As Occam said: Entia non sunt multiplicanda praeter necessitatem.

Comment on Re: Efficient walk/iterate along a string

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