Re^7: What is the best approach to check if a position falls within a target range?

There is no defined min and max.

Would it be fair say that min is typically 0 and max < 2**16 or 2**32? (Which?)

Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.

"Science is about questioning the status quo. Questioning authority".

In the absence of evidence, opinion is indistinguishable from prejudice.

Comment on Re^7: What is the best approach to check if a position falls within a target range? Download Code

Replies are listed 'Best First'.
Re^8: What is the best approach to check if a position falls within a target range? by umasuresh (Hermit) on Feb 12, 2011 at 14:53 UTC
Hi BrowserUk, The target region is a chromosome bed file which spans on an average a 300 base region on any chromosome. Let us say the target region contains incremental regions of 300 each. I am trying to identify if a SNP falls in the target region. 216 or 232 as max is really too big! `target region ============= chr1 100 400 chr1 450 750 chr1 780 980 ...` [download] Thanks Much, Uma	[reply] [d/l]
Re^9: What is the best approach to check if a position falls within a target range? by BrowserUk (Patriarch) on Feb 12, 2011 at 15:25 UTC
Hm. A file containing 2 million queries consisting of a single integer in the range 1 .. 1000, is going to contain (on average) 1000 duplicates of each query? Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error. "Science is about questioning the status quo. Questioning authority". In the absence of evidence, opinion is indistinguishable from prejudice.	[reply]
Re^10: What is the best approach to check if a position falls within a target range? by umasuresh (Hermit) on Feb 12, 2011 at 15:50 UTC
Hi BrowserUk, I am sorry I don't understand your question! I am trying to output something like this: `Query ===== 89 100 200 416 500 780 Target ====== 100_400 420_720 800_1100 Output ======= 89 not_in_target 100 100_400 200 100_400 416 not_in_target 500 420_720 780 not_in_target` [download]	[reply] [d/l]
Re^11: What is the best approach to check if a position falls within a target range? by BrowserUk (Patriarch) on Feb 12, 2011 at 16:20 UTC