in reply to Re^4: Can't locate module
in thread Can't locate module

Now I've nearly run out of ideas. Could you maybe search on your computer for *.pm files with BioPerl in the name, or which are included in a directory named BioPerl?

My only remaining idea is that the installation wrote the modules to directory that's not in Perl's search path (in which case it would be quite a broken installation).

Perl 6 - second systems done right

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Re^6: Can't locate module
by Aester (Initiate) on Feb 22, 2011 at 16:17 UTC
    Yes, I'm finding files with BioPerl (nothing big though).

    And the PPM installed BioPerl in locations as: 

    C:/Perl/html/site/lib/Bio/Align/AlignI.html
C:/Perl/html/site/lib/Bio/Align/DNAStatistics.html
C:/Perl/html/site/lib/Bio/Align/PairwiseStatistics.html

    [download]

    So in the maps /bio/ are all the files. No problem to me it seems.

    I'm going to try the same on Ubuntu this evening, and I'll be reinstalling everything of Perl on my w7. Thanks for your input! :)
[reply]
[d/l]

      Those aren't modules (.html vs .pm), and their names aren't even close to the name of the module you are trying to load (Bio/EnsEMBL/Registry.pm).

      (Upd: Don't bother searching more. As Corion pointed out, there is no such thing as Bio::EnsEMBL::Registry on CPAN. )

[reply]
        Oh, my bad, I'm not that familiar with Perl it seems..

        So the tuturial on this website (http://www.ensembl.org/info/docs/api/registry.html) is out of date (and thus unusable) since the module doesn't seem to exist (anymore)?

[reply]

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