in reply to bioperl problem

Comment made by 'Anonymous Monk' is incorrect.

$bio_seq is infact a Bio::Seq::RichSeq object
This object is an input sequence from a rich sequence database such as GenBank, SwissProt and EMBL.
You can create such an object using the following code snippet (code pulled from cpan docs):

$seq = Bio::Seq::RichSeq->new( -seq => 'ATGGGGGTGGTGGTACCCT', -id => 'human_id', -accession_number => 'AL000012', );

There is documentation available for Bio::Tools::SiRNA here

Hope this is useful!!