Re: What is the best approach to check if a position falls within a target range?

Hi All,
A neat and quick solution for this task was suggested by my colleague 
+and I want to share it with you all.

1. Load SNPs into a hash
2. Loop through the target region which is of the format:
   chr start end
3. Foreach target region, set a counter, as long as the counter is les
+s than end, check if each position in the target region is in the SNP
+ hash, if so, print the SNP hash value.

Since the SNPs is in a hash, the lookup is really quick !
[download]

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