in reply to Comparing and getting information from two large files and appending it in a new file

Hello

Maybe, you can save @genome array if you change 
foreach $genes(@genome){
    chomp($genes);

[download]
to 
while ( $genes =<IN1> ){
    chomp($genes);
    next if ( $genes !~ /^Gm10/ );

[download]
regards.
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