Perhaps you could describe your problem better, I'm not sure what you're trying to achieve. I think these terms relate to bioinformatics. Essentially work out how you would solve the problem in pseudocode, then implement that in Perl (or whatever language best suits your problem/existing skill set).
Here are some links I think you should read and understand:
If you have a specific Perl problem please let us know. The better you explain your problem, the more likely it is that people can/will be able to help you.
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Well, you removed your existing post, rather than provided an update, and changed the post title, which makes the existing replies seem incorrect. Please don't do this, just mark which parts of the post are new.
My previous advice stands, if you want to write perl scripts you'll need to learn some perl. This (which I found via a search engine) suggests that either BioPerl will be able to do this, or provides a link to a STAR parser as a robust solution. I'll leave the rest to you as research. If you have an actual Perl problem please let us know.
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rmgzsm9:
A bit more explanation on your side would help. I don't know what a 'pipeline pilot' or 'mmcif' file is, and your question doesn't inspire me to go to the effort of looking it up in Google to help you solve your problem. Make it easy for people to help, and you'll get some good responses. Make us work too hard to figure out what you want and what you're talking about, and we'll just wander off to a more interesting question.
...roboticus
When your only tool is a hammer, all problems look like your thumb.
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