Re: Extract data from web page!

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Re^2: Extract data from web page! by Anonymous Monk on May 27, 2012 at 20:29 UTC
Hm, that's great, thanks! I seem to be having some trouble though, probably I'm not good in handling objects... I tried using the snipet they have as example: `use Bio::DB::GenBank; $gb = Bio::DB::GenBank->new(); $seq = $gb->get_Seq_by_gi('405830'); # GI Number print $seq;` [download] and I got: `Bio::Seq::RichSeq=HASH(0xa49c0b4)` [download] as a response... What must I do to get the sequence, like in here? `http://www.ncbi.nlm.nih.gov/nuccore/405830?report=fasta` [download]	[reply] [d/l] [select]
Re^3: Extract data from web page! by tobyink (Canon) on May 27, 2012 at 20:51 UTC
Something like this? `use 5.010; use strict; use Bio::DB::GenBank; my $gb = Bio::DB::GenBank->new(); my $seq = $gb->get_Seq_by_gi('405830'); # GI Number say $seq->display_id; say $seq->desc; say $seq->seq;` [download] `perl -E'sub Monkey::do{say$_,for@_,do{($monkey=[caller(0)]->[3])=~s{::}{ }and$monkey}}"Monkey say"->Monkey::do'`	[reply] [d/l]