Ok thank you !
I've tried so:
perl scriptyoumade.pl <> mytext.txt > output.txt
But give me a blank file.
So I'm afraid to not having understand what you said me in the last post.
Comment on Re^4: NON Common Elements between two columns
<> is a file descriptor reading operation and it is already inside the script, so you should run either perl script.pl mytext.txt >output.txt (passing filename as command line argument) or perl script.pl <mytext.txt >output.txt (passing file contents as STDIN).