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#! perl -slw
use strict;
...
>sequence header 3
AATTGGCTGCTCGCTGCTC
AATGTGTCGGCGCGCGTGC

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[ 4:34:55.96] c:\test>junk40
{
...
  "sequence header 2"  => "AATTGGGCTCGCTGCTTTTAGGAGGAGGAGCCCTCTCC",
  "sequence header 3"  => "AATTGGCTGCTCGCTGCTCAATGTGTCGGCGCGCGTGC",
}