hello monks i wrote a script to launch on a calcul cluster and i have many option, i want to have default values if the user don't wrote all of them how can i transform my code ?

use strict; use Getopt::Long; use lib qw(/opt/scripts/Modules/); use alldays qw(all); # verifie les droits de lecture, crea +tion fichier use cluster_utils qw(all); # transfere les données du master v +ers node, gestion des lancements des differents jobs use local_config; # definit les paths complets d +e chaque programme automatiquement à partir du nom du prog use File::Basename; use Text::Table; # Declaration variables my ($bam,$liste_snp,$min_snp_cds,$list_geno,$ref_cds,$prefixe,$seuil_m +in_classe,$seuil_max_amb); # Gestion des options placées lors lancement du script GetOptions("b|extension=s"=>\$bam, "l|liste_snp=s"=>\$liste_snp, "s|min_snp_per_cds"=>\$min_snp_cds, "g|liste_geno=s"=>\$list_geno, "r|reference_cds_fasta=s"=>\$ref_cds, "p|prefixe=s"=>\$prefixe, "mc|min_read_classe=s"=>\$seuil_min_classe, "a|max_read_per_cent_ambi=s"=>\$seuil_max_amb);

like this ?

use strict; use Getopt::Long; use lib qw(/opt/scripts/Modules/); use alldays qw(all); # verifie les droits de lecture, crea +tion fichier use cluster_utils qw(all); # transfere les données du master v +ers node, gestion des lancements des differents jobs use local_config; # definit les paths complets d +e chaque programme automatiquement à partir du nom du prog use File::Basename; use Text::Table; # Declaration variables my ($bam,$liste_snp,$min_snp_cds,$list_geno,$ref_cds,$prefixe,$seuil_m +in_classe,$seuil_max_amb); # Gestion des options placées lors lancement du script GetOptions("b|extension=s"=>\$bam, "l|liste_snp=s"=>\$liste_snp, "s|min_snp_per_cds"=>\$min_snp_cds||1, #default value : 1 "g|liste_geno=s"=>\$list_geno, "r|reference_cds_fasta=s"=>\$ref_cds, "p|prefixe=s"=>\$prefixe, "mc|min_read_classe=s"=>\$seuil_min_classe||30,#default va +lue : 30 "a|max_read_per_cent_ambi=s"=>\$seuil_max_amb||1);#default + value : 1

In reply to default option by etricaen

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