Maybe this helps?
use strict;
while(<DATA>){
$_ =~s /\s+/:/ig;
my ($a, $b, $c, $d, $e, $f) = split /:/;
my $A = int scalar $a; #marker
my $B = int scalar $b; #data
my $C = int scalar $c; #data
my $D = int scalar $d; #marker
my $E = int scalar $e; #$data
my $F = int scalar $f; #$data
print "SCALAR: $a-> $b, $d-> $e\n";
print "INT PART: $A-> $B, $D-> $E\n";
# print FH "$B\n$E\n"; # your FH
}
__DATA__
50545 4.393864E+00 .0 50546 9.589456E+00 .0
50547 2.690474E+00 .0 50548 -1.668896E+01 .0
50549 -3.391918E+01 .0 50550 -3.634581E+01 .0
50551 -3.176630E+01 .0 50552 -1.747830E+01 .0
50553 -5.256684E-01 .0 50554 1.135265E+01 .0
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