You have an interesting case here. Personally, I don't see anything wrong with the approach you've started with, and I think trying to stuff subroutine refs into the GetOpt::Long usage to handle option dependencies is just going to obfuscate things. You don't need to go there, IMO. (I would especially advise against any approach the requires the options to be given in a specific order; this goes against the nature of option usage as most command-line users understand it.)