Here's a one liner (at least the real work is done in one line) that will get the job done. It ties all three files to arrays and then greps through them to find the common ones.
use strict;
use Tie::File;
tie my @f1, 'Tie::File', 'file1.txt' or die;
tie my @f2, 'Tie::File', 'file2.txt' or die;
tie my @f3, 'Tie::File', 'file3.txt' or die;
@f1 = grep { my $word = $_;
my $size = $#f2;
@f2 = grep { if ($_ eq $word) { push @f3, $_; 0 }
else { 1 } } @f2;
$size == $#f2; } @f1;
Outputs the following for your example files:
file1.txt
three
four
five
six
seven
file2.txt
nine
eleven
twenty
thirty
forty
file3.txt
one
two
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