I know I'm a little late for this discussion, but I thought it was still worth mentioning -- at least for future reference.

Recently I bumped into the same issue and asked in Chatterbox. It turns out that, at least if you use the BioPerl modules, there are a few peer-reviewed articles that cover the module. In their Wiki page they explicitly tell which articles should be cited whenever the BioPerl modules are used in published scientific articles.

In reply to Re: Do you cite a programining lang? by bruno
in thread Do you cite a programining lang? by BioNrd

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