Here is the fasta sequence in file

>gi|44809|emb|CAA29377.1| unnamed protein product [Myxococcus xanthus]
MSVDKAFRDMIRNEIEVQLKPLRDVVARLEEGTADLDALRNVAERLAPLAEVVGPLFGAQIPAAAKAGRR
+GPGRPPAARSAVTAAPAAVGGKRRGRKPAAAGADGSRACAIIGCGKPSRTKGYCAAHYQKLRMLEKTNR
+RPSDWKDYADPDSVDDIKLPRGRAASKALAAAAQAGHAG
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#!/usr/bin/perl
use strict;
use warnings;
use autodie;

my $a;
my $b;
my $ali;
my $aro;
my $po;
my $nonpo;
my $sum = 0;
my $u = 0;
my $tag = 0;

my @line;
my $header = '';
my (@headers_found, %header_data);
open (my $fasta_fh, '<', $ARGV[0]);
while (<$fasta_fh>) 
    {
        chomp;
       
        if ($_ !~ /^>(.*)$/)
            {
                @line = split('',$_);
                
                for (@line)
                    {
                        $a += 1 if $_ =~ /[BDEZ]/;
                        $b += 1 if $_ =~ /[KRH]/;
                        $ali += 1 if  $_ =~ /[AVLI]/;
                        $aro += 1 if  $_ =~ /[FHYW]/;
                        $po += 1 if  $_ =~ /[DEHKNQRSTZ]/;
                        $nonpo += 1 if $_ =~ /[ACFGILMPVWY]/;
                        $u += 1 if $_ =~ /[XUGJOP]/;
                        $sum += 1;
                    }
            }  
        
        if ((/^>(.*)$/) || (eof))
            {
                if ($sum > 0)
                    {
                        $header_data{$tag}{'a'} = $a;
                        $header_data{$tag}{'b'} = $b;
                        $header_data{$tag}{'ali'} = $ali;
                        $header_data{$tag}{'aro'} = $aro;
                        $header_data{$tag}{'po'} = $po;
                        $header_data{$tag}{'nonpo'} = $nonpo;
                        $header_data{$tag}{'u'} = $u;
                        $a = 0; $b = 0; $ali = 0; $aro = 0; $po = 0; $
+u = 0; $nonpo = 0; $sum = 0;
                    }
                $tag = $_ unless eof;
                push (@headers_found, $tag) unless (eof);
            }
        
    }
close $fasta_fh;

for (@headers_found) 
    {
        print STDOUT "\nHeader: $_\n";
        print STDOUT "Acidic:  $header_data{$_}{'a'}\n" if $header_dat
+a{$_}{'a'} > 0;;
        print STDOUT "Basic:   $header_data{$_}{'b'}\n" if $header_dat
+a{$_}{'b'} > 0;;
        print STDOUT "Aliphatic: $header_data{$_}{'ali'}\n" if $header
+_data{$_}{'ali'} > 0;;
        print STDOUT "Aromatic: $header_data{$_}{'aro'}\n" if $header_
+data{$_}{'aro'} > 0;;
        print STDOUT "Polar: $header_data{$_}{'po'}\n" if $header_data
+{$_}{'po'} > 0;;
        print STDOUT "Nonpolar: $header_data{$_}{'nonpo'}\n" if $heade
+r_data{$_}{'nonpo'} > 0;;
        print STDOUT "Unknown: $header_data{$_}{'u'}\n" if $header_dat
+a{$_}{'u'} > 0;
    }
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