# test data 37 37 37 37 37 37 37 37 37 37 37 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 39 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 35 35 35 35 35 35 30 30 30 28 28 28 30 30 32 32 35 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 35 35 35 37 37 34 32 32 32 32 32 32 32 30 16 15 15 15 24 27 26 26 13 13 13 23 23 13 13 13 17 21 21 21 21 21 19 21 16 18 17 19 18 # error report --------------------- WARNING --------------------- MSG: seq doesn't validate with [0-9A-Za-z\*\-\.=~\\/\?], mismatch is , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , --------------------------------------------------- ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Attempting to set the sequence to [37 37 37 37 37 37 37 37 37 37 37 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 39 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 35 35 35 35 35 35 30 30 30 28 28 28 30 30 32 32 35 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 35 35 35 37 37 34 32 32 32 32 32 32 32 30 16 15 15 15 24 27 26 26 13 13 13 23 23 13 13 13 17 21 21 21 21 21 19 21 16 18 17 19 18] which does not look healthy STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib/perl5/site_perl/5.8.8/Bio/Root/Root.pm:357 STACK: Bio::PrimarySeq::seq /usr/lib/perl5/site_perl/5.8.8/Bio/PrimarySeq.pm:270 STACK: Bio::PrimarySeq::new /usr/lib/perl5/site_perl/5.8.8/Bio/PrimarySeq.pm:221 STACK: Bio::LocatableSeq::new /usr/lib/perl5/site_perl/5.8.8/Bio/LocatableSeq.pm:109 STACK: Bio::Seq::Meta::Array::new /usr/lib/perl5/site_perl/5.8.8/Bio/Seq/Meta/Array.pm:167 STACK: Bio::Seq::Quality::new /usr/lib/perl5/site_perl/5.8.8/Bio/Seq/Quality.pm:191 STACK: tagfinder.pl:257